WebDec 1, 2024 · The DNAphi method uses a sliding-window approach to mine results from non-linear Poisson-Boltzmann (NLPB) calculations on DNA structures derived from all … WebLink to DNAphi web server. TFBSshape v2.0. TFBSshape is a motif database for analyzing structural profiles of transcription factor binding sites (TFBSs). This new release includes new entries from the JASPAR and UniPROBE databases, methylated TFBSs derived from in vitro high-throughput binding assays and in vivo methylated TFBSs.

DNAphi-High-throughput Prediction of Electrostatic Potential

WebOct 11, 2024 · Corresponding spheres defined by DNAphi are represented by spheres in each structure, with red indicating below-average EP values ≤-6.505 kT/e and pink … Weburpay se International internet recharge kaise karen अब किसी भी मुल्क का इंटरनेट रिचार्ज urpay से ... clicker grids for learning

DNAphi-High-throughput Prediction of Electrostatic Potential

WebAbout DNAphi. Mechanisms of protein-DNA recognition are at the core of transcriptional regulation, and it has become clear that the readout of DNA shape is an important … WebStep 1: Start φ prediction by clicking "φ Prediction" link on the top or "Go to φ Prediction" link on the bottom. Step 2-1: Paste in one or multiple sequences in fasta format. Step 2-2: or … WebJun 22, 2024 · An analysis by DNAphi indicated that the majority of them contain at least one CRE promoter that could be preferentially recognized by CRTC, with strong electrostatic potential in the DNA minor groove at base pairs − 5/− 6 or 5/6 (Fig. S8 and Table S5). This is consistent with the notion that these genes are direct targets of CRTC. clicker gui ahk